PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family YABBY
Protein Properties Length: 229aa    MW: 25155.5 Da    PI: 7.8719
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027801genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.77.2e-71221886170
        YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshld.eslkeelleelkveeenlksnvekeesastsvssekl. 101
                   se++Cyv+Cn C+t+lavsvP +slfk+vtvrCGhCt+ll vn++      a + hl+ +s+ ++ +++l  e  n + n+ +++++ +     +l 
  DCAR_027801  22 PSEKLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRALLLPSANQLHLGhHSFFPPGHHNLLEEMPNSSPNYLMNQANLNIGDF-SLs 118
                  689***************************************7776665555555566524566765555555544444444444333333222.231 PP

        YABBY 102 .senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +  +e+ r+p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  DCAR_027801 119 aRASGFDEIHRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGL 188
                  15677789999999******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-7022188IPR006780YABBY protein
SuperFamilySSF470953.67E-8132181IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4137180IPR009071High mobility group box domain
CDDcd013902.28E-5142178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSSFSSGS SLLSPDHLPP PPSEKLCYVH CNICDTVLAV SVPCSSLFKT VTVRCGHCTN  60
LLPVNMRALL LPSANQLHLG HHSFFPPGHH NLLEEMPNSS PNYLMNQANL NIGDFSLSAR  120
ASGFDEIHRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKA ANPDISHREA FSAAAKNWAH  180
FPHIHFGLMT GDSNNAKKNT TVCQQDNAED ILMKDGYFPS ANIGVSPY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266233.11e-115PREDICTED: protein YABBY 4
SwissprotO221523e-77YAB1_ARATH; Axial regulator YABBY 1
TrEMBLD7TN101e-115D7TN10_VITVI; Putative uncharacterized protein
STRINGVIT_02s0154g00070.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-75YABBY family protein